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3d protein structures  (Immune Epitope Database & Analysis Resource)

 
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    Structured Review

    Immune Epitope Database & Analysis Resource 3d protein structures
    Predicted linear and conformational B-cell epitopes mapped <t>onto</t> <t>HMGB1</t> (A) , S100A8 (B) , and S100A9 (C) structures. Epitopes predicted by BepiPred 2.0, ABCpred, and ElliPro are visualized on the <t>3D</t> structures of HMGB1 (PDB: 2YRQ) and S100A8/S100A9 (PDB: 1XK4). Overlapping linear and discontinuous epitope regions are highlighted, with key residues labeled to illustrate spatial clustering.
    3d Protein Structures, supplied by Immune Epitope Database & Analysis Resource, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/3d+protein+structures/3d+protein+structures/pmc12682578-49-26-8
    Average 86 stars, based on 1 article reviews
    3d protein structures - by Bioz Stars, 2026-09
    86/100 stars

    Images

    1) Product Images from "Discovery and serological validation of DAMP-derived B-cell epitopes as diagnostic biomarkers for diabetic nephropathy"

    Article Title: Discovery and serological validation of DAMP-derived B-cell epitopes as diagnostic biomarkers for diabetic nephropathy

    Journal: Frontiers in Endocrinology

    doi: 10.3389/fendo.2025.1652922

    Predicted linear and conformational B-cell epitopes mapped onto HMGB1 (A) , S100A8 (B) , and S100A9 (C) structures. Epitopes predicted by BepiPred 2.0, ABCpred, and ElliPro are visualized on the 3D structures of HMGB1 (PDB: 2YRQ) and S100A8/S100A9 (PDB: 1XK4). Overlapping linear and discontinuous epitope regions are highlighted, with key residues labeled to illustrate spatial clustering.
    Figure Legend Snippet: Predicted linear and conformational B-cell epitopes mapped onto HMGB1 (A) , S100A8 (B) , and S100A9 (C) structures. Epitopes predicted by BepiPred 2.0, ABCpred, and ElliPro are visualized on the 3D structures of HMGB1 (PDB: 2YRQ) and S100A8/S100A9 (PDB: 1XK4). Overlapping linear and discontinuous epitope regions are highlighted, with key residues labeled to illustrate spatial clustering.

    Techniques Used: Labeling



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    Image Search Results


    Predicted linear and conformational B-cell epitopes mapped onto HMGB1 (A) , S100A8 (B) , and S100A9 (C) structures. Epitopes predicted by BepiPred 2.0, ABCpred, and ElliPro are visualized on the 3D structures of HMGB1 (PDB: 2YRQ) and S100A8/S100A9 (PDB: 1XK4). Overlapping linear and discontinuous epitope regions are highlighted, with key residues labeled to illustrate spatial clustering.

    Journal: Frontiers in Endocrinology

    Article Title: Discovery and serological validation of DAMP-derived B-cell epitopes as diagnostic biomarkers for diabetic nephropathy

    doi: 10.3389/fendo.2025.1652922

    Figure Lengend Snippet: Predicted linear and conformational B-cell epitopes mapped onto HMGB1 (A) , S100A8 (B) , and S100A9 (C) structures. Epitopes predicted by BepiPred 2.0, ABCpred, and ElliPro are visualized on the 3D structures of HMGB1 (PDB: 2YRQ) and S100A8/S100A9 (PDB: 1XK4). Overlapping linear and discontinuous epitope regions are highlighted, with key residues labeled to illustrate spatial clustering.

    Article Snippet: Conformational epitopes were predicted using ElliPro via The Immune Epitope Database (IEDB) server with default settings (minimum score = 0.5; maximum distance = 0.6 Å), employing 3D protein structures obtained from the Protein Data Bank (HMGB1: 2YRQ; S100A8/A9: 1XK4) ( https://www.rcsb.org/ ).

    Techniques: Labeling